Cette rubrique regroupe des éléments spécifiques de la bioinformatique, que ce soit de la programmation, de l’algorithmique, ou des exemples rapides montrés à mes étudiants.
La langage python est récemment devenu très populaire de par sa facilité apparente d’utilisation. Il reste néanmoins un langage informatique qui comporte des notions complexes, et une fois les premiers programmes écrits (scripts), il faut assez rapidement réfléchir à structurer le programme (...)
Before finding the wonderful XmGrace software, i’d loose time to do calculations, regressions, etc.
With this software, i’ve been able to do in a more robust manner and more rapidly everything i could do before and much more.
Here are some examples of what i’m using.
Some basics commands (...)
If in doubt, go for Python :-)
There are many ways to compare the "popularity" of programming languages used nowadays. It can be monitored from the demands of companies nearby you, from the relationships you may have access to (aka "the developpers"), or even by following the guidance of (...)
Comment exécuter facilement un programme plus rapidement sur un ordinateur moderne ?
Voici les commandes rapides pour transformer un programme monotâche en python en programme capable d’utiliser tous les processeurs de votre machine.
Programme exemple monotâche en biopython
Le code (...)
BLAST is a very powerful and widely used method for querying large sequence databases for sequence proximity with a sequence of interest. This difficult problem requires a fast algorithm designed for nucleic and protein sequences only since their alphabet is limited (5 bases for nucleotides, (...)
Molecular Modelling and GNU/Linux
Where Penguins Meet Molecules