Derniers articles

• How popular is a programming language (in bioinformatics) ?

  29 juin 2023, par S. Téletchéa

  If in doubt, go for Python :-)
  There are many ways to compare the "popularity" of programming languages used nowadays. It can be monitored from the demands of companies nearby you, from the relationships you may have access to (aka "the developpers"), or even by following the guidance of (…)

• Interesting PyMol plugins

  29 June 2023, by S. Téletchéa

  Here is a short list of plugins related to protein structure analysis.
  xPyder : a PyMOL plugin to analyze coupled residues and their networks in protein structures
  https://pubmed.ncbi.nlm.nih.gov/22721491/
  Azahar : a PyMOL plugin for construction, visualization and analysis of glycan (…)

• Surveillance des jalons de la biologie synthétique

  29 juin 2023, par S. Téletchéa

  Cette page regroupe quelques liens remarquables ayant comme perspectives la production de composés non naturels inspirés de la nature.
  Cell-free chemoenzymatic starch synthesis from carbon dioxide
  https://www.science.org/doi/10.1126/science.abh4049 The coming of age of de novo protein (…)

• Parallélisation rapide de code (bio)python

  29 juin 2023, par S. Téletchéa

  Comment exécuter facilement un programme plus rapidement sur un ordinateur moderne ?
  Voici les commandes rapides pour transformer un programme monotâche en python en programme capable d’utiliser tous les processeurs de votre machine.
  Programme exemple monotâche en biopython
  Le code (…)

• Making use of BLAST, example on the COVID-19 genome

  28 juin 2023, par S. Téletchéa

  BLAST is a very powerful and widely used method for querying large sequence databases for sequence proximity with a sequence of interest. This difficult problem requires a fast algorithm designed for nucleic and protein sequences only since their alphabet is limited (5 bases for nucleotides, 21 (…)